Rabi Scholars Publications

Rabi Scholar Publications


Feng, E. Y.; Zelaya, R.; Holm, A.; Yang, A.-C.; Cargnello, M. Investigation of the Optical Properties of Uniform Platinum, Palladium, and Nickel Nanocrystals Enables Direct Measurements of Their Concentrations in Solution. Colloids and Surfaces A: Physicochemical and Engineering Aspects 2020, 601, 125007. https://doi.org/10.1016/j.colsurfa.2020.125007.


Choy BC, Cater RJ, Mancia F, Pryor EE. A 10-year meta-analysis of membrane protein structural biology: Detergents, membrane mimetics, and structure determination techniques. BBA - Biomembranes. 2021 Mar 1;1863(3): 183533. https://doi.org/10.1016/j.bbamem.2020.183533.

Kim J, Cater RJ, Choy BC, Mancia F. Structural insights into transporter-mediated drug resistance in infectious diseases. J Mol Biol. 2021 Apr 20:167005. doi: 10.1016/j.jmb.2021.167005. Epub ahead of print. PMID: 33891902.

Cater RJ, Chua GL, Erramilli SK, Keener JE, Choy BC, Tokarz P, Chin CF, Quek DQY, Kloss B, Pepe JG, Parisi G, Wong BH, Marty MT, Clarke OB, Kossiakoff AA, Khelashvili G**, Silver DL**, & Mancia F**. Structural basis of omega-3 fatty acid transport across the blood–brain barrier. Nature. 2021. https://doi.org/10.1038/s41586-021-03650-9.

Huck Jun Hong CC'22

Hong, H.J., Ly, S.Y. Voltammetric Detection of Tetrodotoxin Real-time In Vivo of Mouse
Organs using DNA-immobilized Carbon Nanotube Sensors, Curr. Anal. Chem. 15 (2019)

Hong, H.J., Ly, S.Y. Modified Synthesis of Tetrodotoxin and Novel Toxicity
Diagnostic Sensors, Sensor Lett. 15 (2017) 557–564.

Ly, S.Y., Kim, Y.C., Hong, H.J., Kim, J., and Lee, K. Rapid Voltammetric Diagnosis of
Escherichia Coli Contamination in Non-Treated Human Blood Plasma of Healthy
and Sepsis-Infected Patients, IEEE Sensors Journal 18 (2018) 2200–2205.

Yoon, D.W., Shin, S., Choi, J., Shin, C., Lee, C., Lee, J., Hong, H.J., Jo, R., Lee, T., Kim,
J., et al. (2017). Sleep Fragmentation Induces Activation of NOD-Like Receptor Protein-3
Inflammasome in Rat Hippocampus, Sleep Med. Res. 8 (2017) 26–32.

Chiu Fan Bowen "Leo" Lo CC'22

Ni G, McLeod AS, Sun Z, Matson J, Lo CFB, Rhodes D, Ruta FL, Moore S, Vitalone RA, Cusco R, Artús L, Xiong L, Dean C, Hone J, Millis A, Fogler M, Edgar J, Caldwell J, Basov D. Long-lived phonon polaritons in hyperbolic materials. Nano Letters. 2021 June; 21(13), 5767-5773. https://doi.org/10.1021/acs.nanolett.1c01562

Berkowitz ME, Kim BSY, Ni G, McLeod AS, Lo CFB, Sun Z, Gu G, Watanabe K, Taniguchi T, Millis AJ, Hone JC, Fogler MM, Averitt RD, Basov DN. Hyperbolic Cooper-Pair Polaritons in Planar Graphene/Cuprate Plasmonic Cavities. Nano Letters. 2021 January; 21(1), 308-316. https://doi.org/10.1021/acs.nanolett.0c03684

Bai Y, Zhou L, Wang J, Wu W, McGilly LJ, Halbertal D, Lo CFB, Liu F, Ardelean J, Rivera P, Finney NR, Yang XC, Basov DN, Yao W, Xu X, Hone JC, Pasupathy AN , Zhu XY. Excitons in strain-induced one-dimensional moiré potentials at transition metal dichalcogenide heterojunctions. Nature Materials. 2020 July; 19(10), 1068-1073. https://doi.org/10.1038/s41563-020-0730-8

Chen X, Lo CFB, Zheng WJC, Hu H, Dai Q, Liu M. Rigorous numerical modeling of scattering-type scanning near-field optical microscopy and spectroscopy. Applied Physics Letters. 2017 December; 111(22), 223110. https://doi.org/10.1063/1.5008663


Vo, P.L.H., Ronda, C., Klompe, S.E., Chen, E.E., Acree, C., Wang, H.H., Sternberg, S.H. CRISPR RNA-guided integrases for high-efficiency, multiplexed bacterial genome engineering. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-00745-y


Agrawal, R., Chen, M., Ogunwobi, OO., Bukhari, Z., MA. Haseeb., Martello, LA., EZH2 downregulation augments the effect of irradiation in reducing pancreatic tumor cell proliferation in vitro. Annals of Pathology and Laboratory Medicine, 2019 September. In Press

Xia, R., Boroujeni, AM., Shea, S., Pan, Y., Agrawal, R., Yousefi, E., Fiel, MI., M.A. Haseeb., Gupta, R. Diagnosis of Liver Neoplasms by Computational and Statistical Image Analysis. Gastroenterology Research. 2019 August. In Press.

Haseeb, MA., Agrawal, R., Fried, B. Reduced [14C]-methionine uptake and fecundity in Schistosoma mansoni females treated with recombinant tumor necrosis factor α in vitro. Acta Parasitologica, 2017 Mar 1;62(1):164-170. doi: 10.1515/ap-2017-0019.

Agrawal, R., Prabakaran, S. Implementation of Big Data in Oncology Care: Review and Recommendations. 2019. Heredity. Under review.


Hsieh MH, Choe JH, Gadhvi J, Kim YJ, Arguez MA, Palmer M, Gerold H, Nowak C, Do H, Mazambani S, Knighton JK, Cha M, Goodwin J, Kang MK, Jeong JY, Lee SY, Faubert B, Xuan Z, Abel ED, Scafoglio C, Shackelford DB, Minna JD, Singh PK, Shulaev V, Bleris L, Hoyt K, Kim J, Inoue M, DeBerardinis RJ, Kim TH, Kim JW. p63 and SOX2 Dictate Glucose Reliance and Metabolic Vulnerabilities in Squamous Cell Carcinomas. Cell Rep. 2019 August;28(7):1860-1878.

Katz C, Low-Calle AM, Choe JH, Laptenko O, Tong D, Joseph-Chowdhury JN, Garofalo F, Zhu Y, Friedler A, Prives C. Wild-type and cancer-related p53 proteins are preferentially degraded by MDM2 as dimers rather than tetramers. Genes Dev 2018;32:430-47

Goodwin J, Neugent ML, Lee SY, Choe JH, Choi H, Jenkins DMR, Ruthenborg RJ, Robinson MW, Jeong JY, Wake M, Abe H, Takeda N, Endo H, Inoue M, Xuan Z, Yoo H, Chen M, Ahn JM, Minna JD, Helke KL, Singh PK, Shackelford DB, and Kim JW. The distinct metabolic phenotype of lung squamous cell carcinoma defines selective vulnerability to glycolytic inhibition. Nat Commun. 2017;8:15503.


Khokhlov K., Schuster NJ, Ng F., Nuckolls C. Functionalized Helical Building Blocks for Nanoelectronics. Org. Lett., 2018 March;20 (7):1991–1994.


Prabal Adhikari, Thomas D. Cohen, Arec Jamgochian, Nilay Kumar. Baryons and Low-Density Baryonic Matter in 1+1 Dimensional Large N_c QCD with Heavy Quarks. (2012). http://arxiv.org/abs/1212.2167

Thomas D. Cohen, Nilay Kumar, Kamal K. Ndousse. Baryons and baryonic matter in the large Nc and heavy quark limits. (2012). http://arxiv.org/abs/1102.2197


Griffith DR, Botta L, St Denis TG, Snyder SA. Explorations Of Caffeic Acid Derivatives: Total Syntheses Of Rufescenolide, Yunnaneic Acids C And D, And Studies Toward Yunnaneic Acids A And B. J Org Chem. 2014 Jan 3;79(1):88-105.


Dixon SJ, Lemberg KM, Lamprecht MR, Skouta R, Zaitsev EM, Gleason CE, Patel DN, Bauer AJ, Cantley AM, Yang WS, Morrison B 3rd, Stockwell BR. Ferroptosis: an iron-dependent form of nonapoptotic cell death. Cell. 2012 May 25;149(5):1060-72.


Non-Pointing Photons, ATLAS Collaboration, Phys. Rev. D, arXiv:1304.6310 (added under exceptional authorship)

D. Niesner, Th. Fauster, J. I. Dadap, N. Zaki, K. R. Knox, P.C. Yeh, R. Bhandari, R. M. Osgood, M. Petrović, and M. Kralj. Trapping Surface Electrons on Graphene Layers and Islands. Phys. Rev. 2012. B 85, 081402.


Chatterjee S, Sarkar S, Oktawiec J, Mao Z, Niitsoo O, Stark RE. Isolation and biophysical study of fruit cuticles. J Vis Exp. 2012 Mar 30;(61). pii: 3529.


Pakman A, Huggins JH, Paninski L. (2012). Fast penalized state-space methods for inferring dendritic synaptic connectivity. Journal of Computational Neuroscience. 2012. (*contributed equally)

Pnevmatikakis E, Rahnama Rad K, Huggins JH, Paninski L. Fast low-SNR Kalman ltering and forward-backward smoothing via a low-rank perturbative approach. Journal of Computational and Graphical Statistics.2012.

Huggins JH, Paninski L. Optimal experimental design for sampling voltage on dendritic trees in the low-SNR regime. Journal of Computational Neuroscience. 2012. 32(2), 347-66.


Lynch CD, Gauthier NC, Biais N, Lazar AM, Roca-Cusachs P, Yu CH, Sheetz MP. Filamin depletion blocks endoplasmic spreading and destabilizes force-bearing adhesions. Mol Biol Cell. 2011 Apr 15;22(8):1263-73.

Lynch CD, Lazar AM, Iskratsch T, Zhang X, Sheetz MP. Endoplasmic spreading requires coalescence of vimentin intermediate filaments at force-bearing adhesions. Mol Biol Cell. 2013 Jan;24(1):21-30.


Yang WS, Shimada K, Delva D, Patel M, Ode E, Skouta R, Stockwell BR. Identification of Simple Compounds with Microtubule-Binding Activity That Inhibit Cancer Cell Growth with High Potency. ACS Med Chem Lett. 2012 Jan 12;3(1):35-38.


Meier IB, Manly JJ, Provenzano FA, Louie KS, Wasserman BT, Griffith EY, Hector JT, Allocco E, Brickman AM. White matter predictors of cognitive functioning in older adults. J Int Neuropsychol Soc. 2012 May;18(3):414-27.


Agne M, Huang CH, Hu I, Wang H, Zheng T, Lo SH. Identifying influential regions in extremely rare variants using a fixed-bin approach. BMC Proc. 2011 Nov 29;5 Suppl 9:S3.


An Z, Kavanoor K, Choy ML, Kaufman LJ. Polyelectrolyte microcapsule interactions with cells in two- and three-dimensional culture. Colloids Surf B Biointerfaces. 2009 Apr 1;70(1):114-23.

An Z, Gluck CB, Choy ML, Kaufman LJ. Suberoylanilide hydroxamic acid limits migration and invasion of glioma cells in two and three dimensional culture. Cancer Lett. 2010 Jun 28;292(2):215-27.


Fudenberg G, Paninski L. Bayesian image recovery for dendritic structures under low signal-to-noise conditions. IEEE Trans Image Process. 2009 Mar;18(3):471-82.


ML Hall, DA Goldfeld, A Bochevarov, and RA Friesner. Localized orbital corrections for the barrier heights in density functional theory. J. Chem. Theory Comput. 2009; 5, 2996.

DA Goldfeld, AD Bochevarov, and RA Friesner. Localized orbital corrections applied to thermochemical errors in density functional theory: The role of basis set and the application to molecular reactions. J. Chem. Phys. 2008;129, 214105.


Gershon RR, Stone PW, Zeltser M, Faucett J, MacDavitt K, Chou SS. Organizational climate and nurse health outcomes in the United States: a systematic review. Ind Health. 2007 Oct;45(5):622-36.